moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / reportfile.cpp

diff --git a/reportfile.cpp b/reportfile.cpp
deleted file mode 100644 (file)
index 8e3b746..0000000
--- a/reportfile.cpp
+++ /dev/null
@@ -1,83 +0,0 @@
-/*
- *  reportfile.cpp
- *  Mothur
- *
- *  Created by Pat Schloss on 12/19/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "mothurout.h"
-#include "reportfile.h"
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(){
-       try {
-               m = MothurOut::getInstance();
-       }
-       catch(exception& e) {
-               m->errorOut(e, "ReportFile", "ReportFile");
-               exit(1);
-       }                                                       
-}
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(ifstream& repFile, string repFileName){
-       try {           
-               m = MothurOut::getInstance();
-               
-               m->openInputFile(repFileName, repFile);
-               m->getline(repFile);
-       }
-       catch(exception& e) {
-               m->errorOut(e, "ReportFile", "ReportFile");
-               exit(1);
-       }                                                       
-}
-
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(ifstream& repFile){
-       try {
-               
-               m = MothurOut::getInstance();
-               
-               repFile >> queryName;
-               repFile >> queryLength;
-               repFile >> templateName;
-               repFile >> templateLength;
-               repFile >> searchMethod;
-               repFile >> dummySearchScore;
-               repFile >> alignmentMethod;
-               repFile >> queryStart;
-               repFile >> queryEnd;
-               repFile >> templateStart;
-               repFile >> templateEnd;
-               repFile >> pairwiseAlignmentLength;
-               repFile >> gapsInQuery;
-               repFile >> gapsInTemplate;
-               repFile >> longestInsert;
-               repFile >> simBtwnQueryAndTemplate;
-
-               if(dummySearchScore != "nan"){
-                       istringstream stream(dummySearchScore);
-                       stream >> searchScore;
-               }
-               else{
-                       searchScore = 0;
-               }
-               
-               m->gobble(repFile);             
-       }
-       catch(exception& e) {
-               m->errorOut(e, "ReportFile", "ReportFile");
-               exit(1);
-       }                                                       
-       
-}
-
-/**************************************************************************************************/