added count file to trim.seqs, get.groups, get.lineage, get.seqs, heatmap.sim, list...

[mothur.git] / removeseqscommand.h

diff --git a/removeseqscommand.h b/removeseqscommand.h
index 474951a9feaee7d497417cf2a03f206367056241..151b413070bc64bafd80834e72228dabd1037c43 100644 (file)
--- a/removeseqscommand.h
+++ b/removeseqscommand.h
@@ -34,13 +34,14 @@ class RemoveSeqsCommand : public Command {
        
        private:
                set<string> names;
-               string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
+               string accnosfile, fastafile, namefile, groupfile, countfile, alignfile, listfile, taxfile, qualfile, outputDir;
                bool abort, dups;
                vector<string> outputNames;
                
                int readFasta();
                int readName();
                int readGroup();
+        int readCount();
                int readAlign();
                int readList();
                int readTax();