moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / removeseqscommand.h

diff --git a/removeseqscommand.h b/removeseqscommand.h
deleted file mode 100644 (file)
index df96e45..0000000
--- a/removeseqscommand.h
+++ /dev/null
@@ -1,52 +0,0 @@
-#ifndef REMOVESEQSCOMMAND_H
-#define REMOVESEQSCOMMAND_H
-
-/*
- *  removeseqscommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 7/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
- 
-#include "command.hpp"
-
-class RemoveSeqsCommand : public Command {
-       
-       public:
-       
-               RemoveSeqsCommand(string);      
-               RemoveSeqsCommand();
-               ~RemoveSeqsCommand(){}
-       
-               vector<string> setParameters();
-               string getCommandName()                 { return "remove.seqs";                         }
-               string getCommandCategory()             { return "Sequence Processing";         }
-               string getHelpString(); 
-               string getCitation() { return "http://www.mothur.org/wiki/Remove.seqs"; }
-               string getDescription()         { return "removes sequences from a list, fasta, name, group, alignreport, quality or taxonomy file"; }
-
-               int execute(); 
-               void help() { m->mothurOut(getHelpString()); }  
-       
-       
-       private:
-               set<string> names;
-               string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
-               bool abort, dups;
-               vector<string> outputNames;
-               
-               int readFasta();
-               int readName();
-               int readGroup();
-               int readAlign();
-               void readAccnos();
-               int readList();
-               int readTax();
-               int readQual();
-               
-};
-
-#endif
-