modified chop.seqs

[mothur.git] / removeseqscommand.cpp

diff --git a/removeseqscommand.cpp b/removeseqscommand.cpp
index 5f5fe6535d6e159850694204efc83253387b9d4c..35d9bea3aa07255f872e5c7cbe195bd720a531ba 100644 (file)
--- a/removeseqscommand.cpp
+++ b/removeseqscommand.cpp
@@ -334,7 +334,7 @@ int RemoveSeqsCommand::readName(){
                string name, firstCol, secondCol;
                
                bool wroteSomething = false;
-               
+       int numSeqsInNames = 0; 
                while(!in.eof()){
                        if (m->control_pressed) { in.close();  out.close();  remove(outputFileName.c_str());  return 0; }
 
@@ -359,7 +359,7 @@ int RemoveSeqsCommand::readName(){
                                        validSecond.push_back(parsedNames[i]);
                                }
                        }
-                       
+               numSeqsInNames += parsedNames.size();   
                        if ((dups) && (validSecond.size() != parsedNames.size())) {  //if dups is true and we want to get rid of anyone, get rid of everyone
                                for (int i = 0; i < parsedNames.size(); i++) {  names.insert(parsedNames[i]);  }
                        }else {
@@ -394,7 +394,7 @@ int RemoveSeqsCommand::readName(){
                }
                in.close();
                out.close();
-               
+cout << "your names file contains " << numSeqsInNames << endl;         
                if (wroteSomething == false) {
                        m->mothurOut("Your file contains only sequences from the .accnos file."); m->mothurOutEndLine();
                        remove(outputFileName.c_str());