void help() { m->mothurOut(getHelpString()); }
private:
- string sabundfile, rabundfile, sharedfile, groupfile, listfile, outputDir, groups, label;
+ string sabundfile, rabundfile, sharedfile, groupfile, countfile, listfile, outputDir, groups, label;
int nseqs, allLines;
bool abort, byGroup;
vector<string> outputNames, Groups;