remove.rare command

[mothur.git] / removerarecommand.h

diff --git a/removerarecommand.h b/removerarecommand.h
index 7db54b409672af8937c456d731fffecf91cbe6c2..388ec2d762e763ef1623d573eb90fa4074dbb039 100644 (file)
--- a/removerarecommand.h
+++ b/removerarecommand.h
@@ -13,6 +13,7 @@
 
 #include "command.hpp"
 #include "listvector.hpp"
+#include "globaldata.hpp"
 
 class RemoveRareCommand : public Command {
        
@@ -29,6 +30,7 @@ public:
        void help();    
        
 private:
+       GlobalData* globaldata;
        string sabundfile, rabundfile, sharedfile, groupfile, listfile, outputDir, groups, label;
        int nseqs, allLines;
        bool abort, byGroup;
@@ -40,6 +42,7 @@ private:
        int processRabund();
        int processList();
        int processShared();
+       int processLookup(vector<SharedRAbundVector*>&, ofstream&);
        
 };