added multiple processors option for Windows users to align.seqs, dist.seqs, summary...

[mothur.git] / removeotuscommand.cpp

diff --git a/removeotuscommand.cpp b/removeotuscommand.cpp
index 3390c201809f1ddf48ba0db779e50bb34b341933..25ed99eacbbd3c6dcbcad18daf5fef44ec13b746 100644 (file)
--- a/removeotuscommand.cpp
+++ b/removeotuscommand.cpp
@@ -187,7 +187,8 @@ int RemoveOtusCommand::execute(){
                //make sure groups are valid
                //takes care of user setting groupNames that are invalid or setting groups=all
                SharedUtil* util = new SharedUtil();
-               util->setGroups(Groups, groupMap->namesOfGroups);
+               vector<string> allGroups = groupMap->getNamesOfGroups();
+               util->setGroups(Groups, allGroups);
                delete util;
                
                if (m->control_pressed) { delete groupMap; return 0; }