added count file to trim.seqs, get.groups, get.lineage, get.seqs, heatmap.sim, list...

[mothur.git] / removelineagecommand.h

diff --git a/removelineagecommand.h b/removelineagecommand.h
index a5caec8e4c3e0f04ec7744489c3f27c0a495e38d..a756d24f583be82eac03634ebcd8496c4fd687b6 100644 (file)
--- a/removelineagecommand.h
+++ b/removelineagecommand.h
@@ -34,12 +34,13 @@ class RemoveLineageCommand : public Command {
        private:
                set<string> names;
                vector<string> outputNames, listOfTaxons;
-               string fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir, taxons;
+               string fastafile, namefile, groupfile, alignfile, listfile, countfile, taxfile, outputDir, taxons;
                bool abort, dups;
                
                int readFasta();
                int readName();
                int readGroup();
+        int readCount();
                int readAlign();
                int readList();
                int readTax();