added count file to get.groups and remove.groups. added shortcut parameter to classif...

[mothur.git] / removegroupscommand.h

diff --git a/removegroupscommand.h b/removegroupscommand.h
index c6db38057f8c206ecbba0806486078eccdcc7278..c36998ad8bb52349d3c5d0ee73812dd8a6f50c07 100644 (file)
--- a/removegroupscommand.h
+++ b/removegroupscommand.h
@@ -36,7 +36,7 @@ public:
        
 private:
        set<string> names;
-       string accnosfile, fastafile, namefile, groupfile, designfile, listfile, taxfile, outputDir, groups, sharedfile;
+       string accnosfile, fastafile, namefile, groupfile, countfile, designfile, listfile, taxfile, outputDir, groups, sharedfile;
        bool abort;
        vector<string> outputNames, Groups;
        GroupMap* groupMap;
@@ -49,6 +49,7 @@ private:
        int readShared();
        int readName();
        int readGroup();
+    int readCount();
        int readList();
        int readTax();
        int fillNames();