added significance scores to core.axes. added design file to get.groups and remove...

[mothur.git] / removegroupscommand.h

diff --git a/removegroupscommand.h b/removegroupscommand.h
index 103ab66197e7ecd2ea447430a0edfba3eac3c717..24062bab3614fb3fc7ee803b3272c4242cdf68bd 100644 (file)
--- a/removegroupscommand.h
+++ b/removegroupscommand.h
@@ -27,7 +27,7 @@ public:
        string getCommandCategory()             { return "OTU-Based Approaches";        }
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Remove.groups"; }
-       string getDescription()         { return "removes sequences from a list, fasta, name, group or taxonomy file from a given group or set of groups"; }
+       string getDescription()         { return "removes sequences from a list, fasta, name, group, shared, design or taxonomy file from a given group or set of groups"; }
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }  
@@ -35,7 +35,7 @@ public:
        
 private:
        set<string> names;
-       string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups, sharedfile;
+       string accnosfile, fastafile, namefile, groupfile, designfile, listfile, taxfile, outputDir, groups, sharedfile;
        bool abort;
        vector<string> outputNames, Groups;
        GroupMap* groupMap;
@@ -52,6 +52,7 @@ private:
        int readList();
        int readTax();
        int fillNames();
+    int readDesign();
        
 };