finished shhh.seqs command, fixed bug with remove.groups and get.groups that caused...

[mothur.git] / removegroupscommand.h

diff --git a/removegroupscommand.h b/removegroupscommand.h
index 63c0bff316ceda8770afdf19c90bb8f1feed7e6e..103ab66197e7ecd2ea447430a0edfba3eac3c717 100644 (file)
--- a/removegroupscommand.h
+++ b/removegroupscommand.h
@@ -39,6 +39,10 @@ private:
        bool abort;
        vector<string> outputNames, Groups;
        GroupMap* groupMap;
+       map<string, string> uniqueToRedundant; //if a namefile is given and the first column name is not selected
+       //then the other files need to change the unique name in their file to match.
+       //only add the names that need to be changed to keep the map search quick
+       
        
        int readFasta();
        int readShared();