int nMera = 0;
string chimeraRefSeq = "";
- if(bestSequenceMismatch - minMismatchToChimera > 3 || (minMismatchToChimera == 0 && bestSequenceMismatch != 0)){
+ if(bestSequenceMismatch - minMismatchToChimera >= 3){// || (minMismatchToChimera == 0 && bestSequenceMismatch != 0)){
nMera = 2;
chimeraRefSeq = stitchBimera(leftParentBi, rightParentBi, breakPointBi);