added name option to read.tree for use in unifrac and parimony commands

[mothur.git] / readtreecommand.h

diff --git a/readtreecommand.h b/readtreecommand.h
index 99ddc380bd8d1dd4a2ac1a7eaa3e3bb5fd17e787..b0d10f70b57e9fa8ec27622ee9566b67d5c2853c 100644 (file)
--- a/readtreecommand.h
+++ b/readtreecommand.h
@@ -27,8 +27,11 @@ private:
        GlobalData* globaldata;
        ReadTree* read;
        TreeMap* treeMap;
-       string filename, treefile, groupfile;
+       string filename, treefile, groupfile, namefile;
        bool abort;
+       map<string, string> nameMap;
+       
+       int readNamesFile();
 
 };