fixed some bugs and added scriptengine

[mothur.git] / readtreecommand.cpp

diff --git a/readtreecommand.cpp b/readtreecommand.cpp
index b030542ef8f7e5933f2bf32c4c6bf6ba9e051ee0..88e34ff5c7e3f2c243eb7e0dac56b7d11fcb39b4 100644 (file)
--- a/readtreecommand.cpp
+++ b/readtreecommand.cpp
@@ -33,6 +33,7 @@ ReadTreeCommand::ReadTreeCommand(string option){
                                if (validParameter.isValidParameter(it->first, myArray, it->second) != true) {  abort = true;  }
                        }
                        
+                       globaldata->runParse = true;
                        globaldata->newRead();
                        
                        //check for required parameters