moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / readtree.h

diff --git a/readtree.h b/readtree.h
deleted file mode 100644 (file)
index 6b074de..0000000
--- a/readtree.h
+++ /dev/null
@@ -1,67 +0,0 @@
-#ifndef READTREE_H
-#define READTREE_H
-/*
- *  readtree.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 1/22/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "tree.h"
-
-#define MAX_LINE               513
-#define SKIPLINE(f,c)  {while((c=f.get())!=EOF && ((c) != '\n')){}}
-
-class Tree;
-
-/****************************************************************************/
-
-class ReadTree {
-       public:
-               ReadTree(); 
-               virtual ~ReadTree() {};
-               
-               virtual int read(TreeMap*) = 0;
-               int readSpecialChar(istream&, char, string);
-               int readNodeChar(istream& f);
-               float readBranchLength(istream& f);
-       
-               vector<Tree*> getTrees() { return Trees; }
-               int AssembleTrees(map<string, string>);
-               
-       protected:
-               vector<Tree*> Trees;
-               TreeMap* treeMap;
-               int numNodes, numLeaves;
-               MothurOut* m;
-               
-               
-};
-
-/****************************************************************************/
-
-class ReadNewickTree : public ReadTree {
-       
-public:
-       ReadNewickTree(string file) : treeFile(file) { m->openInputFile(file, filehandle); readOk = 0; } 
-       ~ReadNewickTree() {};
-       int read(TreeMap*);
-       
-private:
-       Tree* T;
-       int readNewickInt(istream&, int&, Tree*, TreeMap*);
-       int readTreeString(TreeMap*);
-       string nexusTranslation(TreeMap*);
-       ifstream filehandle;
-       string treeFile;
-       string holder;
-       int readOk;  // readOk = 0 means success, readOk = 1 means errors.
-       
-};
-
-/****************************************************************************/
-
-#endif