added tree reader class to handle reading trees. Reworked the tree map to tree class...

[mothur.git] / readtree.cpp

diff --git a/readtree.cpp b/readtree.cpp
index 74b4268a8d75997edc28f4795866177057f9f813..6fa4c3da814347cc60c0807bd16cb373fff8c962 100644 (file)
--- a/readtree.cpp
+++ b/readtree.cpp
@@ -20,12 +20,12 @@ ReadTree::ReadTree() {
        }
 }
 /***********************************************************************/
-int ReadTree::AssembleTrees() {
+int ReadTree::AssembleTrees(map<string, string> nameMap) {
         try {
                 //assemble users trees
                 for (int i = 0; i < Trees.size(); i++) {
                         if (m->control_pressed) { return 0;  }
-                        Trees[i]->assembleTree();
+                        Trees[i]->assembleTree(nameMap);
                 }
                 return 0;
         }