fixes while testing

[mothur.git] / readotucommand.cpp

diff --git a/readotucommand.cpp b/readotucommand.cpp
index 24a30cb5cbe925097e63639d50cdfc7163183ead..8683fc3fa80154729ea5228fcaa38fb03726603a 100644 (file)
--- a/readotucommand.cpp
+++ b/readotucommand.cpp
@@ -24,6 +24,7 @@ vector<string> ReadOtuCommand::getValidParameters(){
 //**********************************************************************************************************************
 ReadOtuCommand::ReadOtuCommand(){      
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["rabund"] = tempOutNames;