}else {//there is an orderfile
input = new InputData(philFile, globaldata->getOrderFile(), globaldata->getFormat());
}
-//cout << "made it here" << endl;
+
//memory leak prevention
//if (globaldata->ginput != NULL) { delete globaldata->ginput; }
globaldata->ginput = input; //saving to be used by collector and rarefact commands.
-//cout << "after input" << endl;
+
if ((globaldata->getFormat() == "list") || (globaldata->getFormat() == "rabund") || (globaldata->getFormat() == "sabund")) {//you are reading a list, rabund or sabund file for collect, rarefaction or summary.
order = input->getOrderVector();
//memory leak prevention
}
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the ReadOTUFile class Function read. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
- catch(...) {
- cout << "An unknown error has occurred in the ReadOTUFile class function read. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ errorOut(e, "ReadOTUFile", "read");
exit(1);
}
}