fixing minor bugs

[mothur.git] / readotu.cpp

diff --git a/readotu.cpp b/readotu.cpp
index 09a6c4cd00f58d5fc09424972c3f6ae93c88542d..286a2be271a4a7bb2225a71c7081b1a5c8eb4571 100644 (file)
--- a/readotu.cpp
+++ b/readotu.cpp
@@ -31,21 +31,24 @@ void ReadOTUFile::read(GlobalData* globaldata){
                }else {//there is an orderfile
                        input = new InputData(philFile, globaldata->getOrderFile(), globaldata->getFormat());
                }
-               
+//cout << "made it here"       << endl;        
                //memory leak prevention
                //if (globaldata->ginput != NULL) { delete globaldata->ginput;  }
                globaldata->ginput = input;     //saving to be used by collector and rarefact commands.
-               
+//cout << "after input" << endl;               
                if ((globaldata->getFormat() == "list") || (globaldata->getFormat() == "rabund") || (globaldata->getFormat() == "sabund")) {//you are reading a list, rabund or sabund file for collect, rarefaction or summary.
                        order = input->getOrderVector();
                        //memory leak prevention
                        //if (globaldata->gorder != NULL) { delete globaldata->gorder;  }
                        globaldata->gorder = order;     //saving to be used by collect and rarefact commands.
                        sabund = inputSabund->getSAbundVector(); 
+                       //if (globaldata->sabund != NULL) { delete globaldata->sabund;  }
                        globaldata->sabund = sabund; //saving to be used by summary command.
                        rabund = inputRabund->getRAbundVector(); 
+                       //if (globaldata->rabund != NULL) { delete globaldata->rabund;  }
                        globaldata->rabund = rabund; //saving to be used by heatmap.bin command.
                        list = inputList->getListVector();
+                       //if (globaldata->gListVector != NULL) { delete globaldata->gListVector;  }
                        globaldata->gListVector = list;
 
                }else if (globaldata->getFormat() == "shared") {