working on pam

[mothur.git] / readmatrix.hpp

diff --git a/readmatrix.hpp b/readmatrix.hpp
index 5ef8afa9d7846a18957ac30cb483e0be98f6450f..bc3874e7f424d24a4a3dbf1465559c916d7423f0 100644 (file)
--- a/readmatrix.hpp
+++ b/readmatrix.hpp
@@ -13,9 +13,9 @@
 #include "mothur.h"
 #include "listvector.hpp"
 #include "nameassignment.hpp"
+#include "counttable.h"
 #include "sparsedistancematrix.h"
 
-class SparseMatrix;
 
 class ReadMatrix {
 
@@ -23,6 +23,7 @@ public:
        ReadMatrix(){ DMatrix = new SparseDistanceMatrix(); m = MothurOut::getInstance();  }
        virtual ~ReadMatrix() {}
        virtual int read(NameAssignment*){ return 1; }
+    virtual int read(CountTable*){ return 1; }
        
        void setCutoff(float c)                 {       cutoff = c;             }
     SparseDistanceMatrix* getDMatrix()         {       return DMatrix;         }