changed hard parameter in cluster commands

[mothur.git] / readdistcommand.cpp

diff --git a/readdistcommand.cpp b/readdistcommand.cpp
index 414f33087738ba355ad5ff51c2e89349d41b21f9..4ea630f476ae99cef0b9ef8f65b86a2f44a10873 100644 (file)
--- a/readdistcommand.cpp
+++ b/readdistcommand.cpp
@@ -22,7 +22,7 @@ ReadDistCommand::ReadDistCommand(string option) {
                
                else {
                        //valid paramters for this command
-                       string Array[] =  {"phylip", "column", "name", "cutoff","hard", "precision", "group","outputdir","inputdir","sim"};
+                       string Array[] =  {"phylip", "column", "name", "cutoff", "precision", "group","outputdir","inputdir","sim"};
                        vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
                        
                        OptionParser parser(option);
@@ -126,12 +126,9 @@ ReadDistCommand::ReadDistCommand(string option) {
                        sim = isTrue(temp); 
                        globaldata->sim = sim;
                        
-                       temp = validParameter.validFile(parameters, "hard", false);                     if (temp == "not found") { temp = "F"; }
-                       hard = isTrue(temp);
-                       
                        temp = validParameter.validFile(parameters, "cutoff", false);                   if (temp == "not found") { temp = "10"; }
                        convert(temp, cutoff); 
-                       if (!hard) {  cutoff += (5 / (precision * 10.0));  }
+                       cutoff += (5 / (precision * 10.0)); 
                        
                        if (abort == false) {
                                distFileName = globaldata->inputFileName;