added modify names parameter to set.dir

[mothur.git] / readcluster.h

diff --git a/readcluster.h b/readcluster.h
index a838dace17f35547421c03b0dfc8dcc6efdc2317..7ea579c2fc1a250bba3500f7d6dc59d3ebed26f8 100644 (file)
--- a/readcluster.h
+++ b/readcluster.h
@@ -13,6 +13,7 @@
 #include "mothur.h"
 #include "nameassignment.hpp"
 #include "listvector.hpp"
+#include "counttable.h"
 
 
 /******************************************************/
@@ -23,6 +24,7 @@ public:
        ReadCluster(string, float, string, bool);
        ~ReadCluster();
        int read(NameAssignment*&);
+    int read(CountTable*&);
        string getOutputFile() { return OutPutFile; }
        void setFormat(string f) { format = f;  }
        ListVector* getListVector()             {       return list;    }
@@ -36,6 +38,7 @@ private:
        bool sortWanted;
        
        int convertPhylip2Column(NameAssignment*&);
+    int convertPhylip2Column(CountTable*&);
 };
 
 /******************************************************/