fixed phylip convert for cluster.split command

[mothur.git] / readcluster.cpp

diff --git a/readcluster.cpp b/readcluster.cpp
index 0893a146a84c9e71eb95475eabe66c2b80314c93..af71cbc96f1cca200bb8e5f66258703917f6ac53 100644 (file)
--- a/readcluster.cpp
+++ b/readcluster.cpp
@@ -54,7 +54,7 @@ int ReadCluster::convertPhylip2Column(NameAssignment* nameMap){
                ofstream out;
                string tempFile = distFile + ".column.temp";
                
-               openInputFile(distFile, in);
+               openInputFile(distFile, in);  gobble(in);
                openOutputFile(tempFile, out);
                
                float distance;
@@ -177,7 +177,7 @@ int ReadCluster::convertPhylip2Column(NameAssignment* nameMap){
                list->setLabel("0");
                in.close();
                out.close();
-               
+       
                if(nameMap == NULL){
                        nameMap = new NameAssignment();
                        for(int i=0;i<matrixNames.size();i++){
@@ -209,7 +209,7 @@ int ReadCluster::convertPhylip2Column(NameAssignment* nameMap){
                
                remove(tempFile.c_str());
                distFile = outputFile;
-               
+       
                if (m->control_pressed) {  remove(outputFile.c_str());  }
 
                return 0;