sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / readblast.h

diff --git a/readblast.h b/readblast.h
index fd32380c20c1a7145a8c65d07700b54d2d5bc63b..97ce6c74cbf768aeec8d2f879fb7c8ad887a1042 100644 (file)
--- a/readblast.h
+++ b/readblast.h
@@ -10,7 +10,7 @@
  */
 
 #include "mothur.h"
-#include "sparsematrix.hpp"
+#include "sparsedistancematrix.h"
 #include "nameassignment.hpp"
 
 /****************************************************************************************/
@@ -26,10 +26,10 @@ public:
        ~ReadBlast() {}
        
        int read(NameAssignment*);
-       SparseMatrix* getDistMatrix()           {       return matrix;          }
-       vector<seqDist> getOverlapMatrix()      {       return overlap;         }
-       string getOverlapFile()                         {       return overlapFile;     }
-       string getDistFile()                            {       return distFile;        }
+       SparseDistanceMatrix* getDistMatrix()           {       return matrix;          }
+       vector<seqDist> getOverlapMatrix()          {   return overlap;         }
+       string getOverlapFile()                     {   return overlapFile;     }
+       string getDistFile()                        {   return distFile;        }
        
 private:
        string blastfile, overlapFile, distFile;
@@ -38,7 +38,7 @@ private:
        bool minWanted;  //if true choose min bsr, if false choose max bsr
        bool hclusterWanted;
        
-       SparseMatrix* matrix;
+       SparseDistanceMatrix* matrix;
        vector<seqDist> overlap;
        MothurOut* m;