broke apart read matrix file

[mothur.git] / rarefactsharedcommand.h

diff --git a/rarefactsharedcommand.h b/rarefactsharedcommand.h
index 54a6a95024d0fd97f279be2e50f3e31906f308a4..a16fdb9d8f1ff7166c6b78ca1815368a3c45e287 100644 (file)
--- a/rarefactsharedcommand.h
+++ b/rarefactsharedcommand.h
@@ -15,8 +15,9 @@
 #include "inputdata.h"
 #include "rarefact.h"
 #include "display.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 #include "validcalculator.h"
+#include "sharedutilities.h"
 
 /* The rarefaction.shared() command:
        The rarefaction command generates a rarefaction curve from a given file representing several groups.  
@@ -41,8 +42,9 @@ public:
        
 private:
        GlobalData* globaldata;
+       SharedUtil* util;
        SharedListVector* SharedList;
-       ReadMatrix* read;
+       ReadOTUFile* read;
        SharedOrderVector* order;
        InputData* input;
        ValidCalculators* validCalculator;