modified freq parameter be a percentage of numSeqs, added catchall command - not...

[mothur.git] / rarefactsharedcommand.h

diff --git a/rarefactsharedcommand.h b/rarefactsharedcommand.h
index aa321e84e7d7115c7a000403da3bcd39959dbab2..1bcddb5257f56967a63b66f0740e648811509204 100644 (file)
--- a/rarefactsharedcommand.h
+++ b/rarefactsharedcommand.h
@@ -21,7 +21,7 @@ class GlobalData;
 class RareFactSharedCommand : public Command {
        
 public:
-       RareFactSharedCommand(string);  
+       RareFactSharedCommand(string);
        ~RareFactSharedCommand();
        int execute();  
        void help();
@@ -34,13 +34,14 @@ private:
        ValidCalculators* validCalculator;
        Rarefact* rCurve;
        vector<Display*> rDisplays;
-       int freq, nIters;
+       int nIters;
        string format;
-
+       float freq;
+       
        bool abort, allLines, jumble;
        set<string> labels; //holds labels to be used
        string label, calc, groups, outputDir;
-       vector<string>  Estimators, Groups;
+       vector<string>  Estimators, Groups, outputNames;
 
 
 };