speed up rarefaction.shared

[mothur.git] / rarefactsharedcommand.h

diff --git a/rarefactsharedcommand.h b/rarefactsharedcommand.h
index a16fdb9d8f1ff7166c6b78ca1815368a3c45e287..1935398ac1c312020e03edc32b30fc7ce10045fb 100644 (file)
--- a/rarefactsharedcommand.h
+++ b/rarefactsharedcommand.h
@@ -10,14 +10,11 @@
  */
 
 #include "command.hpp"
-#include "sharedordervector.h"
-#include "sharedlistvector.h"
 #include "inputdata.h"
 #include "rarefact.h"
 #include "display.h"
 #include "readotu.h"
 #include "validcalculator.h"
-#include "sharedutilities.h"
 
 /* The rarefaction.shared() command:
        The rarefaction command generates a rarefaction curve from a given file representing several groups.  
@@ -42,10 +39,8 @@ public:
        
 private:
        GlobalData* globaldata;
-       SharedUtil* util;
-       SharedListVector* SharedList;
        ReadOTUFile* read;
-       SharedOrderVector* order;
+       vector<SharedRAbundVector*> lookup;
        InputData* input;
        ValidCalculators* validCalculator;
        Rarefact* rCurve;