made make.table alias to count.seqs command. added large parameter to count.seqs...

[mothur.git] / rarefactsharedcommand.h

diff --git a/rarefactsharedcommand.h b/rarefactsharedcommand.h
index a5b45468d7059ad2c9e8877376c0154102d05316..af73e132001d1e80bf239362b5541cd08c99d85e 100644 (file)
--- a/rarefactsharedcommand.h
+++ b/rarefactsharedcommand.h
@@ -37,18 +37,19 @@ public:
 private:
        
        vector<SharedRAbundVector*> lookup;
-       int nIters;
+       int nIters, subsampleSize, iters;
        string format;
        float freq;
        
      map<int, string> file2Group; //index in outputNames[i] -> group
-       bool abort, allLines, jumble, groupMode;
+       bool abort, allLines, jumble, groupMode, subsample;
        set<string> labels; //holds labels to be used
        string label, calc, groups, outputDir, sharedfile, designfile;
        vector<string>  Estimators, Groups, outputNames, Sets;
     
     int process(GroupMap&, string);
     vector<string> createGroupFile(vector<string>&);
+    int subsampleLookup(vector<SharedRAbundVector*>&, string);
 
 };