moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / rarefactsharedcommand.h

diff --git a/rarefactsharedcommand.h b/rarefactsharedcommand.h
deleted file mode 100644 (file)
index 2112e8d..0000000
--- a/rarefactsharedcommand.h
+++ /dev/null
@@ -1,53 +0,0 @@
-#ifndef RAREFACTSHAREDCOMMAND_H
-#define RAREFACTSHAREDCOMMAND_H
-/*
- *  rarefactsharedcommand.h
- *  Dotur
- *
- *  Created by Sarah Westcott on 1/6/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "rarefact.h"
-#include "display.h"
-#include "validcalculator.h"
-
-class RareFactSharedCommand : public Command {
-       
-public:
-       RareFactSharedCommand(string);
-       RareFactSharedCommand();
-       ~RareFactSharedCommand() {}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "rarefaction.shared";          }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "Magurran AE (2004). Measuring biological diversity. Blackwell Pub.: Malden, Ma. \nhttp://www.mothur.org/wiki/Rarefaction.shared"; }
-       string getDescription()         { return "generate inter-sample rarefaction curves using a re-sampling without replacement approach"; }
-
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-       
-private:
-       
-       vector<SharedRAbundVector*> lookup;
-       InputData* input;
-       Rarefact* rCurve;
-       vector<Display*> rDisplays;
-       int nIters;
-       string format;
-       float freq;
-       
-       bool abort, allLines, jumble;
-       set<string> labels; //holds labels to be used
-       string label, calc, groups, outputDir, sharedfile;
-       vector<string>  Estimators, Groups, outputNames;
-
-};
-
-#endif