fixes while testing

[mothur.git] / rarefactsharedcommand.cpp

diff --git a/rarefactsharedcommand.cpp b/rarefactsharedcommand.cpp
index 0be8141636a1fffaacce16f2592e6bf8738ad400..8cf1f2fd6606f97bed2e10d0301994d769a8aa94 100644 (file)
--- a/rarefactsharedcommand.cpp
+++ b/rarefactsharedcommand.cpp
@@ -26,6 +26,7 @@ vector<string> RareFactSharedCommand::getValidParameters(){
 //**********************************************************************************************************************
 RareFactSharedCommand::RareFactSharedCommand(){        
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["sharedrarefaction"] = tempOutNames;