fixes while testing

[mothur.git] / rarefactcommand.cpp

diff --git a/rarefactcommand.cpp b/rarefactcommand.cpp
index d430ffc01184cd505ca97ed7a46bb727ab1292b8..cb377273ebf711d1c7ef41363178a30a4add2e31 100644 (file)
--- a/rarefactcommand.cpp
+++ b/rarefactcommand.cpp
@@ -62,6 +62,7 @@ vector<string> RareFactCommand::getRequiredFiles(){
 //**********************************************************************************************************************
 RareFactCommand::RareFactCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["rarefaction"] = tempOutNames;