added multiple processors option for Windows users to align.seqs, dist.seqs, summary...

[mothur.git] / rarefactcommand.cpp

diff --git a/rarefactcommand.cpp b/rarefactcommand.cpp
index 82211144eda568cf86f3ca0684a67c2fe64e0bb3..8d883aa64ae03c4e0619b0669f3b29fafd752435 100644 (file)
--- a/rarefactcommand.cpp
+++ b/rarefactcommand.cpp
@@ -286,7 +286,7 @@ int RareFactCommand::execute(){
                        
                        string fileNameRoot = outputDir + m->getRootName(m->getSimpleName(inputFileNames[p]));
                                                
-                       if (m->control_pressed) {  outputTypes.clear(); for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]);        }  m->Groups.clear();  return 0; }
+                       if (m->control_pressed) {  outputTypes.clear(); for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]);        }  m->clearGroups();  return 0; }
                        
                        if (inputFileNames.size() > 1) {
                                m->mothurOutEndLine(); m->mothurOut("Processing group " + groups[p]); m->mothurOutEndLine(); m->mothurOutEndLine();
@@ -499,7 +499,7 @@ vector<string> RareFactCommand::parseSharedFile(string filename) {
                }
                
                delete input;
-               m->Groups.clear();
+               m->clearGroups();
 
                return filenames;
        }