sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / rarecalc.h

diff --git a/rarecalc.h b/rarecalc.h
index 1079b96708bf8a5fc2f17e54828a22f270493601..8a0fb72b5ef946a14f343704f6e7c2b608305e3b 100644 (file)
--- a/rarecalc.h
+++ b/rarecalc.h
@@ -11,21 +11,20 @@
 
 /* This class is not currently used by Mothur */
 
-
-#include <Carbon/Carbon.h>
 #include "calculator.h"
 
 /***********************************************************************/
 class RareCalc {
 
 public:
-       RareCalc(RAbundVector* b) : bins(b), numSeqs(b->getNumSeqs()), maxRank(b->getMaxRank()), numBins(b->getNumBins()) {     bMatrix = binomial(numSeqs+1);  };
+       RareCalc(RAbundVector* b) : bins(b), numSeqs(b->getNumSeqs()), maxRank(b->getMaxRank()), numBins(b->getNumBins()) {     m = MothurOut::getInstance(); bMatrix = m->binomial(numSeqs+1); }
        EstOutput getValues(int);
-       string getName()        {       return "RareCalc";      }
+       string getName()        {       return "rarecalc";      }
 private:
        RAbundVector* bins;
        vector<vector<double> > bMatrix;
        int numSeqs, maxRank, numBins;
+       MothurOut* m;
 };
 
 /***********************************************************************/