moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / rabundvector.hpp

diff --git a/rabundvector.hpp b/rabundvector.hpp
deleted file mode 100644 (file)
index c722229..0000000
--- a/rabundvector.hpp
+++ /dev/null
@@ -1,65 +0,0 @@
-#ifndef RABUND_H
-#define RABUND_H
-
-#include "datavector.hpp"
-
-/*  Data Structure for a rabund file.
-    This class is a child to datavector.  It represents OTU information at a certain distance. 
-       A rabundvector can be converted into and ordervector, listvector or sabundvector.
-       Each member of the internal container "data" represents an individual OTU.
-       So data[0] = 6, because there are six member in that OTU.
-       example: listvector             =       a,b,c,d,e,f             g,h,i           j,k             l               m  
-                        rabundvector   =       6                               3                       2               1               1
-                        sabundvector   =       2               1               1               0               0               1
-                        ordervector    =       1       1       1       1       1       1       2       2       2       3       3       4       5 */
-
-//class SAbundVector;
-//class OrderVector;
-
-class RAbundVector : public DataVector {
-       
-public:
-       RAbundVector();
-       RAbundVector(int);
-       RAbundVector(vector<int>, int, int, int);
-//     RAbundVector(const RAbundVector&);
-       RAbundVector(string, vector<int>);
-       RAbundVector(const RAbundVector& bv) : DataVector(bv), data(bv.data), maxRank(bv.maxRank), numBins(bv.numBins), numSeqs(bv.numSeqs){};
-       RAbundVector(ifstream&);
-       ~RAbundVector();
-
-       int getNumBins();               
-       int getNumSeqs();                                                       
-       int getMaxRank();                                                       
-
-       void set(int, int);     
-       int get(int);
-       void push_back(int);
-       void pop_back();
-       void resize(int);
-       int size();
-       void quicksort();
-       int sum();
-       int sum(int);
-       int numNZ();
-       void clear();
-       vector<int>::reverse_iterator rbegin();
-       vector<int>::reverse_iterator rend();
-       
-       void print(ostream&);
-       void print(string, ostream&);
-       void nonSortedPrint(ostream&);
-       
-       RAbundVector getRAbundVector();
-       SAbundVector getSAbundVector();
-       OrderVector getOrderVector(map<string,int>*);
-       
-private:
-       vector<int> data;
-       int maxRank;
-       int numBins;
-       int numSeqs;    
-};
-
-
-#endif