added [ERROR] flag if command aborts

[mothur.git] / quitcommand.cpp

diff --git a/quitcommand.cpp b/quitcommand.cpp
index 0dd2dec189317e56518fbfafce1c93a3c7a84f1b..462fe8fbf43e7f47a93ddefeb1058095cf636f86 100644 (file)
--- a/quitcommand.cpp
+++ b/quitcommand.cpp
@@ -45,10 +45,10 @@ vector<string> QuitCommand::getRequiredFiles(){
 //**********************************************************************************************************************
 
 QuitCommand::QuitCommand(string option) {
-               abort = false;
+               abort = false; calledHelp = false;   
                
                //allow user to run help
-               if(option == "help") { help(); abort = true; }
+               if(option == "help") { help(); abort = true; calledHelp = true; }
 
 }
 //**********************************************************************************************************************