modified reportfile class

[mothur.git] / qualityscores.cpp

diff --git a/qualityscores.cpp b/qualityscores.cpp
index fca3d9f4c9cd17947116fbdb9a872bfce863fe47..1ef074df88919d9e15ac1655ea217c37b74949f4 100644 (file)
--- a/qualityscores.cpp
+++ b/qualityscores.cpp
@@ -310,6 +310,7 @@ void QualityScores::updateQScoreErrorMap(map<char, vector<int> >& qualErrorMap,
                int seqLength = errorSeq.size();
                
                int qIndex = start - 1;
+               cout << start << '\t' << stop << '\t' << seqLength << endl;
                for(int i=0;i<seqLength;i++){
                        
                        if(errorSeq[i] == 'm')          {       qualErrorMap['m'][qScores[qIndex]] += weight;   }