added picrust and ref taxonomy parameters to make.biom

[mothur.git] / qualityscores.cpp

diff --git a/qualityscores.cpp b/qualityscores.cpp
index 1f86efc51304cc81fa2f359c8b2c996da52e8c30..0c55650b33149148c80374a0b8c03d41a7a4ea53 100644 (file)
--- a/qualityscores.cpp
+++ b/qualityscores.cpp
@@ -200,7 +200,7 @@ bool QualityScores::stripQualThreshold(Sequence& sequence, double qThreshold){
                
                if(seqName != sequence.getName()){
                        m->mothurOut("sequence name mismatch btwn fasta: " + sequence.getName() + " and qual file: " + seqName);
-                       m->mothurOutEndLine();  
+                       m->mothurOutEndLine();  m->control_pressed = true;
                }
                
                int end;