changed random forest output filename

[mothur.git] / primerdesigncommand.cpp

diff --git a/primerdesigncommand.cpp b/primerdesigncommand.cpp
index 48bb00f5cc7b8f7bc9cacdce2bdb6e32aeec656b..195adf4f716b29bd7c12a2f3529603e4baec6b4d 100644 (file)
--- a/primerdesigncommand.cpp
+++ b/primerdesigncommand.cpp
@@ -39,7 +39,7 @@ vector<string> PrimerDesignCommand::setParameters(){
 string PrimerDesignCommand::getHelpString(){   
        try {
                string helpString = "";
-               helpString += "The primer.design allows you to design sequence fragments that are specific to particular OTUs.\n";
+               helpString += "The primer.design allows you to identify sequence fragments that are specific to particular OTUs.\n";
                helpString += "The primer.design command parameters are: list, fasta, name, count, otunumber, cutoff, length, pdiffs, mintm, maxtm, processors and label.\n";
                helpString += "The list parameter allows you to provide a list file and is required.\n";
         helpString += "The fasta parameter allows you to provide a fasta file and is required.\n";
@@ -1088,7 +1088,7 @@ map<string, int> PrimerDesignCommand::readCount(unsigned long int& numSeqs){
         map<string, int> nameMap;
         
         CountTable ct;
-        ct.readTable(countfile);
+        ct.readTable(countfile, false);
         vector<string> namesOfSeqs = ct.getNamesOfSeqs();
         numSeqs = ct.getNumUniqueSeqs();