fixed bug in phylo.diversity rooting. added filename patterns and create filename...

[mothur.git] / preclustercommand.h

diff --git a/preclustercommand.h b/preclustercommand.h
index e63afa6c8af8ee442e267714fcfccd140d4f79dd..0bd56c8662a5b8c622b57a4628f23cc829828f90 100644 (file)
--- a/preclustercommand.h
+++ b/preclustercommand.h
@@ -48,8 +48,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "pre.cluster";                         }
        string getCommandCategory()             { return "Sequence Processing";         }
-       string getOutputFileNameTag(string, string);
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011).  Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.  PLoS ONE.  6:e27310.\nhttp://www.mothur.org/wiki/Pre.cluster"; }
        string getDescription()         { return "implements a pseudo-single linkage algorithm with the goal of removing sequences that are likely due to pyrosequencing errors"; }