else if (countfile == "not open") { abort = true; countfile = ""; }
else {
m->setCountTableFile(countfile);
- ct.readTable(countfile, true);
+ ct.readTable(countfile, true, false);
if (ct.hasGroupInfo()) { bygroup = true; }
else { bygroup = false; }
}
m->mothurOut("It took " + toString(time(NULL) - start) + " secs to run pre.cluster."); m->mothurOutEndLine();
}else {
+ if (processors != 1) { m->mothurOut("When using running without group information mothur can only use 1 processor, continuing."); m->mothurOutEndLine(); processors = 1; }
if (namefile != "") { readNameFile(); }
//reads fasta file and return number of seqs