numSeqs passing fix

[mothur.git] / preclustercommand.cpp

diff --git a/preclustercommand.cpp b/preclustercommand.cpp
index cfa91bfeedd4334adbe8bd262e476571f61f3ece..c5b66a81eaa7ec7381af79c4170f1efaf41e91d1 100644 (file)
--- a/preclustercommand.cpp
+++ b/preclustercommand.cpp
@@ -115,6 +115,8 @@ int PreClusterCommand::execute(){
                
                if (abort == true) { return 0; }
                
+               int start = time(NULL);
+               
                //reads fasta file and return number of seqs
                int numSeqs = readFASTA(); //fills alignSeqs and makes all seqs active
                
@@ -182,7 +184,8 @@ int PreClusterCommand::execute(){
                outNames.close();
                
                if (m->control_pressed) {  remove(newFastaFile.c_str()); remove(newNamesFile.c_str());  return 0; }
-               
+
+               m->mothurOut("It took " + toString(time(NULL) - start) + " secs to cluster " + toString(numSeqs) + " sequences.");
                m->mothurOut("Total number of sequences before precluster was " + toString(numSeqs) + "."); m->mothurOutEndLine();
                m->mothurOut("pre.cluster removed " + toString(count) + " sequences."); m->mothurOutEndLine();