added checks to make sure windows processes completed their tasks.

[mothur.git] / preclustercommand.cpp

diff --git a/preclustercommand.cpp b/preclustercommand.cpp
index 19616d8b0e4ce5d46e6753bbc58b776d1b5dd656..a1d5f48bdd77c81bb12d0095628922202a4bcacd 100644 (file)
--- a/preclustercommand.cpp
+++ b/preclustercommand.cpp
@@ -464,6 +464,9 @@ int PreClusterCommand::createProcessesGroups(string newFName, string newNName, s
                
                //Close all thread handles and free memory allocations.
                for(int i=0; i < pDataArray.size(); i++){
+            if (pDataArray[i]->count != (pDataArray[i]->end-pDataArray[i]->start)) {
+                m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->end-pDataArray[i]->start) + " groups assigned to it, quitting. \n"); m->control_pressed = true; 
+            }
                        for (int j = 0; j < pDataArray[i]->mapFileNames.size(); j++) {
                                outputNames.push_back(pDataArray[i]->mapFileNames[j]); outputTypes["map"].push_back(pDataArray[i]->mapFileNames[j]); 
                        }