pat's edits from 1/26/2010

[mothur.git] / preclustercommand.cpp

diff --git a/preclustercommand.cpp b/preclustercommand.cpp
index 66fd8500e3c7d583604106e0408e15bc36dc4a92..89e6cbfb9e2560e4860cae8dd6a0ee4632a687da 100644 (file)
--- a/preclustercommand.cpp
+++ b/preclustercommand.cpp
@@ -99,12 +99,9 @@ int PreClusterCommand::execute(){
                //sort seqs by number of identical seqs
                sort(alignSeqs.begin(), alignSeqs.end(), comparePriority);
        
-               //go through active list and cluster everthing you can, until all nodes are inactive
-               //taking advantage of the fact that maps are already sorted
-//             map<string, bool>::iterator itActive;
-//             map<string, bool>::iterator it2Active;
                int count = 0;
-               
+
+               //think about running through twice...
                for (int i = 0; i < numSeqs; i++) {
                        
                        //are you active