//append output files
for(int i=0;i<processIDS.size();i++){
- newFName = m->getFullPathName(".\\" + newFName);
- newNName = m->getFullPathName(".\\" + newNName);
- cout << newFName << endl;
+ //newFName = m->getFullPathName(".\\" + newFName);
+ //newNName = m->getFullPathName(".\\" + newNName);
+
m->appendFiles((newFName + toString(processIDS[i]) + ".temp"), newFName);
m->mothurRemove((newFName + toString(processIDS[i]) + ".temp"));