changed added group output to indicator command. a few changes to work with the guy

[mothur.git] / pipelinepdscommand.h

diff --git a/pipelinepdscommand.h b/pipelinepdscommand.h
index 8abe0ea7a439e99aae5be49dc5734516ce9bdab1..4697f405f6045cabad7f225641c4544a36ca6e9f 100644 (file)
--- a/pipelinepdscommand.h
+++ b/pipelinepdscommand.h
@@ -26,8 +26,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "pipeline.pds";        }
        string getCommandCategory()             { return "Hidden";                      }
+       string getOutputFileNameTag(string, string) { return ""; }
        string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Pipeline.pds"; }
+       string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011).  Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.  PLoS ONE.  6:e27310.\nhttp://www.mothur.org/wiki/Pipeline.pds"; }
        string getDescription()         { return "pat's pipeline"; }