added modify names parameter to set.dir

[mothur.git] / pipelinepdscommand.h

diff --git a/pipelinepdscommand.h b/pipelinepdscommand.h
index 13695a6ec9a178918ab74242d9a2f05a89b9ead7..22386bcc697c2e3c64767ad99dd9fafaaa5d206f 100644 (file)
--- a/pipelinepdscommand.h
+++ b/pipelinepdscommand.h
@@ -27,6 +27,10 @@ public:
        string getCommandName()                 { return "pipeline.pds";        }
        string getCommandCategory()             { return "Hidden";                      }
        string getHelpString(); 
+    string getOutputPattern(string) { return ""; }     
+       string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011).  Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.  PLoS ONE.  6:e27310.\nhttp://www.mothur.org/wiki/Pipeline.pds"; }
+       string getDescription()         { return "pat's pipeline"; }
+
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }