added pairwise.seqs

[mothur.git] / pipelinepdscommand.cpp

diff --git a/pipelinepdscommand.cpp b/pipelinepdscommand.cpp
index 0217d392a1e0454be1319b13e9f750d3a1e1d1fc..22f5a97b498187b23b651695e8b3d9a1b8cef1f6 100644 (file)
--- a/pipelinepdscommand.cpp
+++ b/pipelinepdscommand.cpp
@@ -238,6 +238,8 @@ int PipelineCommand::execute(){
        try {
                if (abort == true) { return 0; }
                
+               int start = time(NULL);
+               
                if (pipeFilename == "") { 
                        createPatsPipeline(); 
                        
@@ -279,6 +281,8 @@ int PipelineCommand::execute(){
                
                if (m->control_pressed) { return 0; }
                
+               m->mothurOut("It took " + toString(time(NULL) - start) + " secs to run the pipeline analysis."); m->mothurOutEndLine(); m->mothurOutEndLine();
+               
                m->mothurOutEndLine();
                m->mothurOut("Output File Names: "); m->mothurOutEndLine();
                for (int i = 0; i < outputNames.size(); i++) {  m->mothurOut(outputNames[i]); m->mothurOutEndLine();    }