changing command name classify.shared to classifyrf.shared

[mothur.git] / pintail.h

diff --git a/pintail.h b/pintail.h
index 7164842106d7b61d36883b351167163aeb4e878a..c970fdd87371e66afef3a9e1a40b465857d07b4b 100644 (file)
--- a/pintail.h
+++ b/pintail.h
@@ -15,7 +15,7 @@
 #include "decalc.h"
 
 /***********************************************************/
-//This class was created using the algorythms described in the 
+//This class was created using the algorithms described in the 
 // "At Least 1 in 20 16S rRNA Sequence Records Currently Held in the Public Repositories is Estimated To Contain Substantial Anomalies" paper 
 //by Kevin E. Ashelford 1, Nadia A. Chuzhanova 3, John C. Fry 1, Antonia J. Jones 2 and Andrew J. Weightman 1.
 
@@ -28,13 +28,13 @@ class Pintail : public Chimera {
                ~Pintail();
                
                int getChimeras(Sequence*);
-               int print(ostream&, ostream&);
+               Sequence print(ostream&, ostream&);
                
                void setCons(string c)          { consfile = c;  }
                void setQuantiles(string q) { quanfile = q;  }
                
                #ifdef USE_MPI
-               int print(MPI_File&, MPI_File&);
+               Sequence print(MPI_File&, MPI_File&);
                #endif
                
        private:
@@ -66,7 +66,7 @@ class Pintail : public Chimera {
                float DE;                       //DE is the deviaation for query
                vector<float> probabilityProfile;
                vector< vector<float> > quantiles;  //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
-               vector< vector<quanMember> > quantilesMembers;  //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
+               vector< vector<float> > quantilesMembers;  //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
                set<int>  h;
                string mergedFilterString;