checking in chimera files in progress after move to michigan

[mothur.git] / pintail.h

diff --git a/pintail.h b/pintail.h
index 181be2ca4410c32a4ab0222adbe8e5e2c138e1de..37efd00b86793f064770784035d5e7dbfb78ee15 100644 (file)
--- a/pintail.h
+++ b/pintail.h
@@ -35,17 +35,10 @@ class Pintail : public Chimera {
                
        private:
        
-               struct linePair {
-                       int start;
-                       int end;
-                       linePair(int i, int j) : start(i), end(j) {}
-                       linePair(){}
-               };
-
                Dist* distcalculator;
                DeCalculator* decalc;
                int iters;
-               string fastafile, templateFile, consfile, quanfile;
+               string fastafile, templateFile, consfile;
                
                
                vector<linePair*> lines;
@@ -77,7 +70,6 @@ class Pintail : public Chimera {
                
                
                vector<float> readFreq();
-               vector< vector<float> > readQuantiles();
                vector<Sequence*> findPairs(int, int);
                        
                void createProcessesSpots();
@@ -85,8 +77,6 @@ class Pintail : public Chimera {
                void createProcesses();
                void createProcessesQuan();
                
-               vector<float> makeCompliant;  //used by decalc->getQuantiles so pintail and mallard can use same function, it contains the highest de value for each seq in the template
-               
 };
 
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