- vector< vector<int> > findWindows(int, int);
- vector< vector<float> > calcObserved(int, int);
- vector< vector<float> > calcExpected(int, int);
- vector<float> calcDE(int, int);
- vector<float> calcDist(int, int);
+ vector<int> findWindows(Sequence*, int, int, int&);
+ vector<float> calcObserved(Sequence*, Sequence, vector<int>, int);
+ vector<float> calcExpected(vector<float>, float);
+ vector<float> findQav(vector<int>, int);
+ float calcDE(vector<float>, vector<float>);
+ float calcDist(Sequence*, Sequence, int, int);
+ float getCoef(vector<float>, vector<float>);